FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005318596

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318596
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3088087
Sequences flagged as poor quality0
Sequence length35-76
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG163980.5310083556583736No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN105380.34124686253981834No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG66970.21686565177729775No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA43890.14212682479476776No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC33490.10844901714232792No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG33010.1068946567891384No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)