FastQCFastQC Report
Wed 8 May 2024
EGAF00005318597

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318597
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3088087
Total Bases229.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT209030.6768915513066828No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN104620.3387857919806016No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG80630.26110015682848314No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA49030.15877143357683898No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT46330.1500281565901479No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT41750.1351969682201311No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC33340.1079632795319562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)