EGAF00005318602 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318602
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3443909
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13168	0.38235621208342035	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7075	0.2054351610335813	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6614	0.1920492091980363	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	6018	0.17474329315902365	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5144	0.14936515453805543	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5028	0.14599688900026103	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	4959	0.1439933517407109	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4824	0.1400733875372433	No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC	4743	0.13772140901516272	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3990	0.1158567197913766	No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGG	3493	0.10142544416824023	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2045	48.500637	70
CGCGGCA	4130	36.33461	32
GCGGCAC	4310	34.996502	33
CCCGTCG	4120	34.55365	44
CCGTCGC	4215	33.78876	45
CGGCACC	4475	33.63717	34
TCGCCGG	4195	33.614353	48
ATGGCCG	2405	32.884125	69
AGGACCG	635	31.714712	70
TATCGGA	185	31.642763	8
GTACGGC	1060	30.860456	14
GCACCCC	4875	30.831432	36
GTCGCCT	295	30.720268	70
TACGGCC	1085	30.466747	15
CACCCCC	4995	30.315132	37
CCCCCGA	4985	30.274548	19
GACGTAT	325	29.987658	44
TACGGGT	905	29.298096	6
GTGCCGT	475	29.104725	1
GGACGTA	335	29.077124	43