EGAF00005318604 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318604
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3449257
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13094	0.3796179872940752	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7134	0.20682715147059208	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	6720	0.19482456656607494	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	6174	0.17899507053258135	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5174	0.15000331955548687	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5118	0.14837978150076958	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	5010	0.1452486723952434	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4934	0.1430452993209842	No Hit
CCTTGGTCCGTGTTACAAGACGGGTCGGGTGGGTAGCCGACGTCGCCGCC	4678	0.13562341107084802	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	3861	0.11193715052256181	No Hit
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGG	3569	0.10347155923725022	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2000	0.0	44.418056	70
ACGATCG	35	0.0013579776	39.37061	6
CGCGGCA	4080	0.0	37.0452	32
CCGTCGC	4000	0.0	36.03893	45
GCGGCAC	4220	0.0	35.909164	33
CCCGTCG	4060	0.0	35.82889	44
TCGCCGG	4125	0.0	35.092514	48
GTTATCG	140	0.0	34.44928	6
CGGCACC	4375	0.0	34.33314	34
GTTCCGT	345	0.0	32.249706	1
ATGGCCG	2220	0.0	31.800465	69
CCCCCGA	4885	0.0	31.188637	19
CGTACGT	155	0.0	31.134005	19
CACCCCC	4900	0.0	30.845331	37
GCACCCC	4930	0.0	30.57169	36
GTCGCCT	245	0.0	28.842896	70
GGCACCC	5220	0.0	28.785036	35
ACCCGCG	5340	0.0	28.694866	25
GGCGATC	1280	0.0	28.392223	70
CGCGGAT	110	3.7063728E-8	28.196825	3