FastQCFastQC Report
Wed 8 May 2024
EGAF00005318627

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318627
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3603555
Total Bases267.4 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC62

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT225240.6250494303541919No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN200190.5555347427748432No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG110740.3073076448118594No Hit
GGGCGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCACCCGGG80680.22389001971664094No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG78630.21820119298859042No Hit
GGGATTTCCACCGCGGCGGTGCGCCGCGACCGGCTCCGGGACGGCTGGGA56820.1576776266769898No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC53390.14815924829786142No Hit
GGCCGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCACCCGGG49040.13608783548468112No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT49020.13603233473611476No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC47490.13178652747078926No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA45890.12734646758548157No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT43600.12099163187463491No Hit
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT41440.11499755102946951No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)