EGAF00005318643 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318643
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3745240
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	57

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	23419	0.6253003812839765	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	21411	0.5716856596640002	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17884	0.47751278956755777	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	16053	0.4286240668154778	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9423	0.25159936345868356	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	8625	0.23029231771528658	No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	6693	0.1787068385470624	No Hit
CGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	4782	0.1276820711089276	No Hit
CGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	4522	0.1207399258792494	No Hit
GGGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGA	4224	0.11278315942369514	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	4097	0.1093921884845831	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTCTACG	4620	63.60029	4
TCTACGG	4675	62.925385	5
TACGGCC	4740	62.133987	7
CTACGGC	4810	61.299393	6
ACGGCCA	5120	57.8573	8
CGGCCAT	5155	57.26495	9
GGGTCTA	3935	56.199852	2
GCCATAC	5245	56.15009	11
GCGCGGT	8930	55.440884	9
CCATACC	5335	55.074326	12
CATACCA	5335	54.88153	13
CCGAACT	1495	54.640163	67
GCCGGTT	1510	53.812828	3
GGCCATA	5550	53.25111	10
GCGTCTA	890	52.77774	2
CGCGGTG	9470	52.46055	10
CGTCTAC	1085	51.823715	3
CGGTTCA	1565	51.48417	5
CCTGGTT	8245	51.25202	70
TGGCGCG	9750	50.95126	15