EGAF00005318647 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318647
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4761511
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	22922	0.48140180711543035	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	16477	0.346045614511864	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	13273	0.27875605033780243	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	7990	0.16780387570248184	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7743	0.1626164467539821	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5416	0.1137454056075897	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	8665	51.88735	9
CGCGGTG	9200	48.946033	10
TGGCGCG	9225	48.92638	15
CCGAACT	1415	47.855392	67
GCCGGTT	1425	46.413868	3
CGGTTCA	1530	43.899628	5
CGCGTGC	10385	43.87573	18
GGCGCGT	10515	43.379375	16
GCGTGCC	10595	43.164806	19
CGTGCCT	10635	42.900085	20
CTACTCG	10595	42.46552	37
TACTCGG	10560	42.174088	38
GTAGTCC	10700	42.098785	27
TAGTCCC	10785	41.77006	28
TGTAGTC	10915	41.401154	26
GCGCGTG	11135	41.016853	17
CGGCAAT	415	40.61472	1
GCCGAAC	1635	40.57875	66
CCTGTAG	11200	40.415833	24
ACTCGGG	11255	40.02885	39