EGAF00005318648 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318648
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4785218
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	32414	0.6773777077658739	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23391	0.48881785532028005	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	12438	0.25992546212105694	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	8480	0.17721240704185265	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7103	0.14843628858706126	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	7005	0.14638831501511532	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	5867	0.12260674435313082	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	4805	0.10041339809387995	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	9360	36.775314	32
GCGGCAC	9710	35.260803	33
CGGCACC	9850	34.783623	34
TCGCCGG	9560	33.835182	48
CCCGTCG	9585	33.70901	44
CCGTCGC	9560	33.638943	45
CCCCCGA	10535	32.537086	19
GCACCCC	10610	32.46243	36
ACCCGCG	10810	31.748648	25
CGTACGT	210	31.075415	19
GGCACCC	11080	31.036919	35
CACCCCC	11190	30.836761	37
GTGCCGT	895	30.683369	1
CCCCGAC	11410	30.120485	20
CCCCCGT	11300	28.545984	42
CCCGACC	12615	27.447618	21
AGGAGGG	16630	27.169516	70
CCCGCGC	12825	26.773169	26
CGTCGCC	12195	26.505867	46
AGTCCGC	13300	26.401476	7