EGAF00005318649 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318649
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4785218
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23046	0.48160815243945	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17296	0.36144643775894847	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	13854	0.2895165904667248	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	8573	0.17915589216625033	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	8108	0.16943846654426192	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5663	0.11834361569316174	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5025	0.10501088978600347	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	8880	50.46409	9
CCGAACT	1360	50.023228	67
CGCGGTG	9555	46.930573	10
TGGCGCG	9505	46.603775	15
GCCGGTT	1505	45.107475	3
CGGTTCA	1535	44.44926	5
TACTCGG	10850	41.759064	38
CTACTCG	10790	41.699276	37
CGTGCCT	10715	41.656834	20
GGCGCGT	10835	41.29451	16
GCCGAAC	1675	41.08779	66
GTAGTCC	10960	40.978794	27
TAGTCCC	11010	40.943966	28
GCGTGCC	10910	40.85585	19
CGCGTGC	11055	40.448917	18
CCGGTTC	1710	40.100864	4
TGTAGTC	11345	39.858944	26
ACTCGGG	11595	39.49232	39
CGAACTT	1780	39.077553	68
TACGGCC	650	39.03356	7