EGAF00005318650 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318650
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4929592
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	33408	0.6777031446010137	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	24350	0.49395568639351894	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	12629	0.25618753032705344	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	8797	0.17845290239029923	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	7300	0.14808527764569562	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7144	0.1449207155480616	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	6080	0.12333677918983964	No Hit
TGGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCAC	5155	0.10457254880322754	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	9660	0.0	36.519432	32
GCGGCAC	10085	0.0	35.107994	33
CGGCACC	10100	0.0	34.971687	34
TCGCCGG	9830	0.0	34.182545	48
CCGTCGC	9845	0.0	33.895237	45
CCCGTCG	9875	0.0	33.87097	44
GCACCCC	10710	0.0	33.15679	36
ACCCGCG	11050	0.0	32.413395	25
CCCCCGA	10955	0.0	32.212868	19
GGCACCC	11290	0.0	31.461123	35
CACCCCC	11510	0.0	31.02544	37
CCCCGAC	11705	0.0	30.310158	20
GTTCCGT	585	0.0	29.941135	1
CCCCCGT	11615	0.0	28.786602	42
TATCGCG	60	5.6180486E-4	28.578472	10
AGGAGGG	17205	0.0	27.564142	70
CCCGACC	12910	0.0	27.464529	21
CCCGCGC	13085	0.0	27.389257	26
AGGACCG	830	0.0	27.208323	70
GTGCCGT	965	0.0	27.048315	1