EGAF00005318651 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318651
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4929592
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23987	0.48659199382017826	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17593	0.3568855191261265	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14072	0.2854597297301683	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	8778	0.17806747495533098	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	8180	0.16593665358106716	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	6014	0.12199792599468678	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5297	0.10745311173825339	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	8765	50.310448	9
CCGAACT	1475	49.08845	67
CGGTTCA	1560	47.470898	5
CGCGGTG	9375	47.11007	10
TGGCGCG	9385	46.9426	15
GCCGGTT	1645	44.184776	3
GCCGAAC	1715	43.059242	66
CCGGTTC	1780	41.4111	4
CGCGTGC	10785	41.35348	18
CTACTCG	10865	41.203323	37
GTAGTCC	10930	41.200317	27
CGTGCCT	10845	41.103344	20
GGCGCGT	10880	41.060352	16
TACTCGG	10930	41.048126	38
GCGTGCC	10935	40.651226	19
TAGTCCC	11130	40.484898	28
TGTAGTC	11175	40.482872	26
CTTAGGC	1765	40.461475	18
CGAACTT	1875	40.0551	68
ACTCGGG	11680	38.947533	39