EGAF00005318653 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318653
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4871823
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	23306	0.47838355375390285	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17499	0.3591879261623421	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14121	0.28985043175829667	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	8602	0.1765663489827114	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	8029	0.16480483794259357	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5859	0.1202629898500007	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	5256	0.10788569289155209	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	9115	50.94692	9
CCGAACT	1445	48.09819	67
CGCGGTG	9685	47.948494	10
TGGCGCG	9695	47.68497	15
CGGTTCA	1530	44.351116	5
GCCGGTT	1510	43.121075	3
GGCGCGT	11155	41.96566	16
CGCGTGC	11195	41.874447	18
CGTGCCT	11205	41.857887	20
CTACTCG	11205	41.67631	37
TACTCGG	11240	41.6079	38
GCGTGCC	11345	41.318707	19
GCCGAAC	1695	41.248905	66
CGAACTT	1730	41.104355	68
TAGTCCC	11485	40.66171	28
CCGGTTC	1655	40.58551	4
GTAGTCC	11465	40.555157	27
TGTAGTC	11685	40.212677	26
GCGCGTG	11835	39.791206	17
ACTCGGG	11865	39.766407	39