EGAF00005318654 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318654
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3780254
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17322	0.4582231775960028	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	11264	0.29796939570727254	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	10926	0.28902819757614173	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7674	0.2030022321251429	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6633	0.1754644000112162	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5158	0.13644585787092614	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5055	0.13372117323333302	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4778	0.12639362328563106	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4664	0.12337795291004255	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4542	0.12015065654318467	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4462	0.11803439663049098	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	4412	0.1167117341850574	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4073	0.10774408280501786	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	3935	0.10409353445562124	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3843	0.10165983555602348	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2750	0.0	48.696938	70
AGGACCG	995	0.0	35.822308	70
GTTCCGT	490	0.0	35.209724	1
CGCGGCA	5165	0.0	34.597298	32
ATGGCCG	3090	0.0	34.594948	69
GCGGCAC	5300	0.0	33.98731	33
TAGTCCG	390	0.0	33.515694	6
CGGCACC	5405	0.0	33.0204	34
CCGTCGC	5225	0.0	32.57099	45
CCCGTCG	5280	0.0	32.538174	44
TCGCCGG	5365	0.0	31.59205	48
ACGATCG	80	2.8285795E-6	30.097975	6
GCACCCC	6030	0.0	29.852373	36
CACCCCC	6135	0.0	29.301039	37
GGCACCC	6165	0.0	29.13165	35
CCCCCGA	6235	0.0	28.86967	19
GATAGGC	3485	0.0	28.271385	40
TCAGGAT	2240	0.0	27.959906	70
CGTACTA	175	0.0	27.517784	2
TTCCGTT	590	0.0	27.401184	2