EGAF00005318658 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318658
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3879377
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18736	0.48296414604716165	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	11343	0.2923923093836974	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11254	0.29009812658063394	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8251	0.21268878997839086	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6907	0.1780440519186457	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	5284	0.1362074374313195	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5168	0.13321726658687721	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	5140	0.13249550121063253	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4866	0.1254325114573809	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4637	0.11952950177309399	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	4567	0.11772508833248224	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4560	0.11754464698842108	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4235	0.1091670131570095	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4149	0.10695016235854365	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4037	0.10406310085356489	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2855	0.0	53.97772	70
ACGATCG	60	2.9756484E-7	40.140903	6
ATGGCCG	3240	0.0	38.196697	69
CGCGGCA	5685	0.0	36.23538	32
GCGGCAC	5845	0.0	35.260845	33
CGGCACC	5910	0.0	34.708298	34
CCGTCGC	5830	0.0	33.80267	45
TCGCCGG	5805	0.0	33.78861	48
CCCGTCG	5900	0.0	33.724003	44
GCACCCC	6495	0.0	32.14517	36
GTTCCGT	410	0.0	31.93178	1
AGGACCG	890	0.0	31.79207	70
TATGGCC	3675	0.0	31.43413	68
CACCCCC	6685	0.0	31.148174	37
GTTATCG	245	0.0	30.89562	6
CGTACGT	145	0.0	30.86551	19
CCCCCGA	6710	0.0	30.835434	19
GGCACCC	6695	0.0	30.704699	35
GTATGGC	3740	0.0	30.272203	67
ACCCGCG	7150	0.0	29.17755	25