Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005318663 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3660329 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 61 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | 45738 | 1.2495598073287948 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC | 16525 | 0.451462149987064 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC | 13847 | 0.3782993277380257 | No Hit |
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA | 11994 | 0.32767546305263817 | No Hit |
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT | 7269 | 0.19858870609718418 | No Hit |
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC | 4736 | 0.129387276389636 | No Hit |
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC | 4270 | 0.11665618035974362 | No Hit |
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC | 3716 | 0.10152092885639516 | No Hit |
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG | 3693 | 0.10089257003946914 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCGAACT | 1195 | 0.0 | 53.282703 | 67 |
GCGCGGT | 8040 | 0.0 | 52.03255 | 9 |
GCCGGTT | 1210 | 0.0 | 48.882027 | 3 |
TACGGCC | 545 | 0.0 | 48.08857 | 7 |
TGGCGCG | 8780 | 0.0 | 47.878727 | 15 |
CGCGGTG | 8830 | 0.0 | 47.49345 | 10 |
CTTAGGC | 1275 | 0.0 | 46.250603 | 18 |
CGGTTCA | 1290 | 0.0 | 45.32328 | 5 |
TCTACGG | 615 | 0.0 | 44.802326 | 5 |
GTAGTCC | 9885 | 0.0 | 43.313675 | 27 |
CTACTCG | 10030 | 0.0 | 43.09064 | 37 |
TGTAGTC | 9950 | 0.0 | 42.927597 | 26 |
TACTCGG | 10075 | 0.0 | 42.90778 | 38 |
TAGTCCC | 10025 | 0.0 | 42.578087 | 28 |
CGTGCCT | 9970 | 0.0 | 42.544342 | 20 |
TTAGGCA | 1410 | 0.0 | 42.12623 | 19 |
ACTCTTC | 3465 | 0.0 | 42.087032 | 5 |
CCTGTAG | 10140 | 0.0 | 42.008232 | 24 |
TCTGGTC | 3420 | 0.0 | 41.954796 | 10 |
GGGGACT | 3550 | 0.0 | 41.88679 | 1 |