EGAF00005318663 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318663
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3660329
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	45738	1.2495598073287948	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	16525	0.451462149987064	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	13847	0.3782993277380257	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	11994	0.32767546305263817	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7269	0.19858870609718418	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4736	0.129387276389636	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4270	0.11665618035974362	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3716	0.10152092885639516	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	3693	0.10089257003946914	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	1195	53.282703	67
GCGCGGT	8040	52.03255	9
GCCGGTT	1210	48.882027	3
TACGGCC	545	48.08857	7
TGGCGCG	8780	47.878727	15
CGCGGTG	8830	47.49345	10
CTTAGGC	1275	46.250603	18
CGGTTCA	1290	45.32328	5
TCTACGG	615	44.802326	5
GTAGTCC	9885	43.313675	27
CTACTCG	10030	43.09064	37
TGTAGTC	9950	42.927597	26
TACTCGG	10075	42.90778	38
TAGTCCC	10025	42.578087	28
CGTGCCT	9970	42.544342	20
TTAGGCA	1410	42.12623	19
ACTCTTC	3465	42.087032	5
CCTGTAG	10140	42.008232	24
TCTGGTC	3420	41.954796	10
GGGGACT	3550	41.88679	1