EGAF00005318665 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318665
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3678108
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	62

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	46674	1.2689676322718093	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17319	0.47086708710021563	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14123	0.3839745869343695	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12640	0.34365494433551164	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7372	0.20042913367416074	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4823	0.13112719909257695	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4349	0.11824013867999525	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4187	0.11383570031113822	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3859	0.10491807200876102	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	1160	56.010582	67
GCGCGGT	8125	52.3892	9
GCCGGTT	1230	50.024574	3
CGGTTCA	1240	49.620464	5
TGGCGCG	8685	48.507256	15
CGCGGTG	8975	47.53863	10
ACTCTTC	3620	44.118065	5
TGTAGTC	9825	44.04858	26
GGGGACT	3525	43.90786	1
GTAGTCC	9865	43.864525	27
TACTCGG	10015	43.7396	38
CTACTCG	9985	43.724712	37
GGGCGTA	270	43.71122	1
TCTGGTC	3585	43.703503	10
TAGTCCC	9975	43.495937	28
TACGGCC	520	43.32144	7
TCTACGG	560	43.229073	5
CCTGTAG	10080	42.712883	24
CGTGCCT	9985	42.67781	20
GCCGAAC	1540	42.451706	66