EGAF00005318667 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318667
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3775526
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	47652	1.262128773580158	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	17283	0.45776403076021727	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	14376	0.3807681366781741	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12802	0.3390785813685298	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	7492	0.19843592654374517	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4805	0.12726703510980986	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	4438	0.11754653523773906	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4061	0.10756117160893608	No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	3842	0.10176065533650146	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	1200	53.55513	67
GCGCGGT	8295	51.88561	9
TGGCGCG	8680	49.65099	15
CGGTTCA	1215	49.213924	5
CGCGGTG	9030	47.66236	10
GCCGGTT	1255	47.109375	3
TCTACGG	505	44.568462	5
CTTAGGC	1365	44.17694	18
TGTAGTC	10060	44.091633	26
CTACTCG	10255	43.941654	37
GTAGTCC	10080	43.937653	27
CGTGCCT	9945	43.857998	20
TAGTCCC	10125	43.85144	28
TACTCGG	10320	43.799675	38
TCTGGTC	3635	43.71907	10
ACTCTTC	3735	43.71092	5
CCTGTAG	10145	43.343567	24
CACCATA	1465	43.14068	54
ACTCGGG	10730	42.478725	39
TACGGCC	530	42.47302	7