EGAF00005318684 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318684
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3137114
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15633	0.49832425598814706	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6362	0.20279785815880458	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4351	0.13869435411017897	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4125	0.13149028055722553	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4035	0.12862140170870423	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	3593	0.11453201891929972	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	3145	0.10025137753999376	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	5060	0.0	36.563843	32
GCGGCAC	5245	0.0	35.147434	33
TCGCCGG	5115	0.0	33.999264	48
CGGCACC	5570	0.0	33.10564	34
CCCGTCG	5270	0.0	32.89039	44
CCGTCGC	5325	0.0	32.492085	45
CCCCCGA	6175	0.0	30.397562	19
GCACCCC	6180	0.0	30.021397	36
CACCCCC	6145	0.0	29.749115	37
TCGCCGT	365	0.0	29.684734	1
ACCCGCG	6305	0.0	29.52113	25
TAGTCCG	440	0.0	29.112997	6
GGCACCC	6710	0.0	27.537294	35
TCCGCTA	140	4.0381565E-10	27.4618	1
CCCCGAC	6840	0.0	27.344908	20
AGTCCGC	6900	0.0	27.295288	7
TCCGCCC	7215	0.0	26.919338	9
CGTCCGT	235	0.0	26.771269	1
CAGTCCG	6640	0.0	26.539185	6
GTCCGCC	7225	0.0	26.16331	8