Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005318685 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3137114 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 58 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC | 5606 | 0.17869927583122577 | No Hit |
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA | 4739 | 0.15106240959047074 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC | 4285 | 0.13659050962126337 | No Hit |
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC | 3911 | 0.12466872418407493 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCGCGGT | 2915 | 0.0 | 46.679173 | 9 |
TGGCGCG | 3140 | 0.0 | 43.221996 | 15 |
CGGGTAG | 485 | 0.0 | 41.03045 | 1 |
CGCGGTG | 3575 | 0.0 | 38.352024 | 10 |
CTACTCG | 3530 | 0.0 | 38.29671 | 37 |
TACTCGG | 3555 | 0.0 | 37.83794 | 38 |
GGGGTAG | 1505 | 0.0 | 37.57956 | 1 |
CGGCATA | 225 | 0.0 | 37.23933 | 1 |
GTAGTCC | 3840 | 0.0 | 35.481262 | 27 |
GGGGTAT | 1115 | 0.0 | 35.381542 | 1 |
AGGATCG | 3735 | 0.0 | 35.237957 | 59 |
TAGTCCC | 3880 | 0.0 | 35.12333 | 28 |
GATCGCT | 3845 | 0.0 | 34.630302 | 61 |
GTCGTAC | 170 | 0.0 | 34.620045 | 3 |
TGTAGTC | 3935 | 0.0 | 34.619682 | 26 |
ACTCGGG | 4020 | 0.0 | 34.505352 | 39 |
GTACGCA | 340 | 0.0 | 34.07803 | 65 |
CCTGTAG | 4080 | 0.0 | 33.29905 | 24 |
CGGCAAA | 615 | 0.0 | 32.92502 | 1 |
GGGGACT | 2890 | 0.0 | 32.61663 | 1 |