EGAF00005318695 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318695
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4016494
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	9868	0.24568691002650572	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	8393	0.2089633396688754	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5690	0.14166584090502812	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5249	0.13068611580149256	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	5147	0.12814658754625302	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5051	0.1257564433060276	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4698	0.116967683756032	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	1050	49.606777	67
GCGCGGT	5320	48.62401	9
TGGCGCG	5560	46.898098	15
CGGTTCA	1085	45.653843	5
CGCGGTG	6020	43.1997	10
GCCGGTT	1145	42.364445	3
CGGCATA	250	40.06202	1
TACTCGG	6525	39.639866	38
CTACTCG	6535	39.613846	37
CGAACTT	1390	39.486526	68
GTAGTCC	6680	38.98931	27
TGTAGTC	6840	38.425037	26
TCTACGG	485	38.299805	5
TAGTCCC	6855	38.105087	28
GTCTACG	490	37.908993	4
GGGGTAG	1870	37.49119	1
ACTCGGG	7005	37.488815	39
CGTGCCT	7155	36.628853	20
CCGGTTC	1355	36.556763	4
TGCGACA	925	36.521175	24