EGAF00005318697 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318697
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4016265
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	10036	0.249883909552781	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	8730	0.21736613495374432	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5735	0.14279436242379426	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5362	0.1335071266462746	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	5295	0.13183891003208206	No Hit
GGGCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC	5123	0.12755632409714002	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4907	0.12217819292302676	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGCGGT	5205	0.0	48.781425	9
TGGCGCG	5525	0.0	46.141743	15
CGCGATA	30	6.30027E-4	46.019352	1
CCGAACT	900	0.0	42.686832	67
CGCGGTG	6080	0.0	41.98533	10
GCCGGTT	920	0.0	41.884613	3
CGGTTCA	975	0.0	39.874268	5
GTCGTAC	190	0.0	39.837616	3
TCTACGG	600	0.0	39.565506	5
CCGACTC	885	0.0	39.26471	3
TACGGCC	605	0.0	39.238518	7
GTCTACG	625	0.0	39.08384	4
CTACTCG	6530	0.0	38.894226	37
TACTCGG	6580	0.0	38.771744	38
CGGGTAG	495	0.0	38.349457	1
GTAGTCC	6675	0.0	38.25515	27
TAGTCCC	6745	0.0	37.923046	28
TGTAGTC	6855	0.0	37.388092	26
CCTGTAG	6980	0.0	36.942085	24
ACTCGGG	7205	0.0	36.43891	39