EGAF00005318712 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318712
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3340508
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12940	0.38736623292026245	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7336	0.21960731721043628	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7258	0.21727234300890763	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5381	0.16108328433878918	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	5029	0.1505459648652241	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4293	0.12851338778413343	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3854	0.11537167400886333	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3555	0.10642093956967023	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3505	0.10492416123535703	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3415	0.10222996023359322	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1530	41.478916	70
CGCGGCA	4080	35.340828	32
GCGGCAC	4200	34.421368	33
CCGTCGC	4110	33.177902	45
CGGCACC	4375	32.971706	34
TCGCCGG	4125	32.843853	48
CCCGTCG	4370	31.351797	44
ATGGCCG	1565	31.16004	69
CCCCCGA	4905	29.75542	19
GTTCCGT	305	29.734743	1
ACCCGCG	4920	29.265726	25
GCACCCC	5005	29.182297	36
TACGGGT	1150	29.165033	6
CACCCCC	5025	29.143509	37
AGTCCGC	5180	28.435993	7
GTACGGG	1200	28.237965	5
CAGTCCG	4995	28.10471	6
TCGCCGT	275	27.904913	1
CCCCGAC	5180	27.844408	20
GGCACCC	5300	27.616817	35