EGAF00005318714 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318714
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3346979
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13317	0.3978811937571165	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	7351	0.2196308969969635	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	7185	0.21467120050648658	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5319	0.1589194315231736	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4858	0.1451458165707045	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4114	0.12291681543266329	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3957	0.11822601814950137	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3550	0.10606579844092241	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3516	0.10504995699106567	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3463	0.10346643943687725	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1585	0.0	48.067207	70
CGCGGCA	3990	0.0	35.960327	32
GCGGCAC	4150	0.0	34.750305	33
CGGCACC	4190	0.0	34.427338	34
ATGGCCG	1770	0.0	33.14245	69
TCGCCGG	4105	0.0	32.51405	48
AGGACCG	555	0.0	32.245342	70
CCGTCGC	4275	0.0	31.423018	45
CCCGTCG	4315	0.0	31.205803	44
CCCCCGA	4655	0.0	31.190834	19
GCACCCC	4865	0.0	29.807531	36
ACCCGCG	4930	0.0	29.275198	25
CTTACCC	1110	0.0	29.020807	70
CACCCCC	5040	0.0	28.85134	37
CCCCGAC	5040	0.0	28.815094	20
AGTCCGC	5075	0.0	28.804403	7
CGCCCTA	920	0.0	28.265146	61
GTTCCGT	345	0.0	28.156883	1
CAGTCCG	4920	0.0	28.02608	6
CGTTGCG	125	3.916284E-9	27.754642	1