FastQCFastQC Report
Wed 8 May 2024
EGAF00005318719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3525948
Total Bases263.7 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT135980.38565514862953165No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG123270.34960810539463427No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC47940.13596343451463266No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN45520.12910003210484103No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCC43780.12416518904986688No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA41290.11710325847119696No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC37530.10643945968573558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)