EGAF00005318723 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318723
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3643241
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12670	0.34776727644424293	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7616	0.20904463910018578	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5229	0.1435260527645577	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	5153	0.14143999806765462	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4556	0.1250534894617183	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4123	0.11316846730699397	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	4088	0.11220778422289385	No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC	3972	0.10902380600130489	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	585	0.0	49.138577	67
GCGCGGT	3930	0.0	47.9856	9
CGCGTAA	60	4.4037733E-9	47.282677	61
TGGCGCG	4110	0.0	45.290466	15
CGGCATA	205	0.0	43.78114	1
TCGCGTA	65	9.03492E-9	43.59247	60
GGGGACT	3670	0.0	43.079132	1
TCTGGTC	2955	0.0	42.97262	10
CGGTTCA	680	0.0	41.997215	5
GTAGTCC	4750	0.0	40.242065	27
GCCGGTT	720	0.0	40.142467	3
ACTCTTC	3240	0.0	40.14192	5
CGCGGTG	4735	0.0	39.9729	10
TACTCGG	4755	0.0	39.58861	38
TGTAGTC	4865	0.0	39.56251	26
CTACTCG	4765	0.0	39.55912	37
GTACGCA	840	0.0	39.487366	65
TAGTCCC	4895	0.0	39.06508	28
CGGGTAG	470	0.0	38.926517	1
CGGCAAT	320	0.0	38.834713	1