EGAF00005318725 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318725
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3592089
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	61

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	12620	0.3513275979520552	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	7297	0.20314084645452826	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	5211	0.14506878866308714	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	4858	0.13524163794382602	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	4490	0.12499690291638096	No Hit
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG	4151	0.11555949755142482	No Hit
GGGGGGCCCTTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGGCCGC	4000	0.11135581551570688	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	3847	0.10709645557223108	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGAACT	600	0.0	52.66767	67
TCGCGTA	50	5.7103534E-8	49.521152	60
GCGCGGT	3735	0.0	45.79568	9
GGGGACT	3545	0.0	42.795918	1
TGGCGCG	4000	0.0	42.761723	15
CGGTTCA	750	0.0	42.216797	5
ACTCTTC	3235	0.0	41.384155	5
GGGGTAG	1490	0.0	41.284573	1
GCCGGTT	745	0.0	41.11369	3
TCTGGTC	3220	0.0	40.828766	10
GTACGCA	845	0.0	40.069523	65
AGTACGC	915	0.0	39.663734	64
GTTGATC	1045	0.0	38.86194	10
GGGACTC	3910	0.0	38.55228	2
GGTACGA	260	0.0	38.386395	3
CGCGGTG	4515	0.0	38.189037	10
GGACTCT	3905	0.0	37.984722	3
CGAACTT	870	0.0	37.370567	68
CTTAGGC	840	0.0	37.30257	18
TTCTGGT	3555	0.0	37.078136	9