EGAF00005318726 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318726
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3931114
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	16697	0.4247396539505087	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	7753	0.197221449187177	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6472	0.16463526623750926	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5167	0.13143856932157144	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5149	0.13098068384686884	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4653	0.1183633952106197	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4299	0.10935831420813541	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4124	0.1049066498707491	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4089	0.10401631700327184	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1955	38.490913	70
CGCGGCA	5225	34.24662	32
GCGGCAC	5365	33.48992	33
CGGCACC	5480	32.919598	34
TCGCCGG	5175	32.050926	48
CCCGTCG	5220	31.987885	44
CCGTCGC	5265	31.59529	45
GCACCCC	6070	29.614983	36
CCCCCGA	6195	29.307713	19
ACCCGCG	6215	28.847757	25
CACCCCC	6395	28.388145	37
ATGGCCG	2110	28.020105	69
GGCACCC	6540	27.64376	35
CGCCCTA	1315	26.189407	61
CCCCGAC	7005	25.676212	20
AGTCCGC	7115	25.464952	7
CAAACCG	585	25.41423	10
CAGTCCG	6875	25.24745	6
GTCCGCC	7295	25.026213	8
AAACCGC	585	24.823202	11