EGAF00005318730 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318730
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4070021
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18492	0.45434655005465574	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8409	0.2066082705715769	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6958	0.1709573488687159	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5428	0.13336540523992382	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4949	0.12159642419535427	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	4884	0.11999938083857553	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4430	0.10884464723892087	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4335	0.10651050694824424	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4309	0.10587168960553275	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2180	0.0	39.93825	70
CGTACGT	240	0.0	37.480762	19
CGCGGCA	5825	0.0	36.787113	32
GCGGCAC	6075	0.0	35.33685	33
CGGCACC	6205	0.0	34.601204	34
CCCGTCG	5865	0.0	34.464714	44
TCGCCGG	5955	0.0	33.94711	48
CCGTCGC	5945	0.0	33.897724	45
GCACCCC	6700	0.0	32.32082	36
ATGGCCG	2210	0.0	31.028406	69
CACCCCC	7120	0.0	30.617525	37
CCCCCGA	7115	0.0	30.440075	19
ACCCGCG	7115	0.0	30.421747	25
GGCACCC	7175	0.0	30.221657	35
TCGCCGT	370	0.0	29.957264	1
CGCCCTA	1355	0.0	28.532867	61
CGATCTA	310	0.0	28.092316	47
CGTTACG	50	0.007587829	27.710468	1
CCCCGAC	7840	0.0	27.671997	20
AGTCCGC	8255	0.0	26.77528	7