EGAF00005318732 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318732
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4014882
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17909	0.4460654136285948	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8263	0.20580928654939296	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6698	0.16682931154639166	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5226	0.13016571844452715	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	5065	0.12615563794901072	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4973	0.12386416338014417	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4430	0.11033948195737758	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4350	0.10834689537575451	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	4064	0.10122339834645203	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1925	0.0	42.32939	70
CGCGGCA	5570	0.0	36.781155	32
GCGGCAC	5755	0.0	35.606804	33
TATCGGA	180	0.0	34.581768	8
CGGCACC	5955	0.0	34.42126	34
CCGTCGC	5690	0.0	34.00955	45
CCCGTCG	5745	0.0	33.795372	44
TCGCCGG	5715	0.0	33.7191	48
ATGGCCG	1970	0.0	32.40072	69
GCACCCC	6575	0.0	31.347422	36
CCCCCGA	6735	0.0	30.761448	19
CACCCCC	6795	0.0	30.597765	37
GTTATCG	195	0.0	30.148207	6
GGCACCC	6965	0.0	30.032621	35
ACCCGCG	6865	0.0	29.999462	25
TTATCGG	215	0.0	28.952177	7
ACCGTTA	110	3.5264748E-8	28.341864	1
AGGACCG	625	0.0	28.167337	70
GTGCCGT	635	0.0	27.821142	1
CGTACGT	200	0.0	27.669895	19