EGAF00005318736 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318736
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3458059
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17223	0.4980539661122034	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	11750	0.339785989770562	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	11109	0.3212495796052063	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8689	0.2512681246907586	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8448	0.24429889715589007	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4840	0.13996290982889534	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4691	0.13565413429903883	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4662	0.13481551355832852	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	4027	0.11645261113243006	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	3983	0.11518022104307647	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3954	0.11434160030236616	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3804	0.11000390681593344	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	3505	0.10135743779964425	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1735	0.0	44.032413	70
ACGATCG	70	2.356137E-8	39.10574	6
AGGACCG	995	0.0	34.99503	70
CGCGGCA	5250	0.0	34.843346	32
GCGGCAC	5495	0.0	33.374584	33
CGGCACC	5640	0.0	32.719883	34
TCGCCGG	5375	0.0	31.83541	48
GTTCCGT	265	0.0	31.279568	1
CCCGTCG	5585	0.0	30.932552	44
ATGGCCG	1905	0.0	30.812265	69
CCCCCGA	5965	0.0	30.723484	19
CCGTCGC	5555	0.0	30.688316	45
GGCGATC	630	0.0	29.697273	70
GCACCCC	6255	0.0	29.539135	36
ACCCGCG	6180	0.0	29.507826	25
GATAGGC	3460	0.0	28.67868	40
GGCACCC	6430	0.0	28.607029	35
CACCCCC	6495	0.0	28.46514	37
CCCCGAC	6445	0.0	28.445217	20
ACCGACG	510	0.0	28.379425	30