EGAF00005318738 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318738
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3460713
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	17537	0.5067452863037183	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	12000	0.34674935482948166	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	11403	0.32949857442671493	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8773	0.2535026741599202	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	8720	0.2519711978427567	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4858	0.14037569714680184	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4632	0.13384525096417993	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4560	0.13176475483520303	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	4096	0.11835711311512975	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	4093	0.11827042577642237	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4088	0.11812594687857676	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3789	0.10948610878740883	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	3564	0.10298455838435605	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3484	0.10067289601882617	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3463	0.10006608464787459	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1855	41.52674	70
AGGACCG	915	37.29137	70
CGCGGCA	5180	36.96455	32
GCGGCAC	5240	36.569603	33
GTTCCGT	370	36.18384	1
CGGCACC	5395	35.859905	34
TCGCCGG	5345	34.999126	48
CCGTCGC	5440	34.265953	45
CCCGTCG	5590	33.81656	44
CCCCCGA	6085	31.79798	19
GCACCCC	6200	31.464985	36
CACCCCC	6285	31.235193	37
GGCACCC	6285	31.024904	35
CCCCCGT	6035	31.017681	42
ACCCGCG	6230	30.919607	25
CCCCGAC	6360	30.434977	20
ATGGCCG	2060	30.188381	69
GATAGGC	3360	29.96917	40
AGTCCGC	6700	29.198479	7
ATAGGCA	3600	28.295107	41