EGAF00005318739 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318739
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3460713
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	18090	0.5227246524054435	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	10383	0.300024879266209	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	9792	0.2829474735408571	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	9726	0.2810403520892949	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	8674	0.250641991982577	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5445	0.1573375197538773	No Hit
GGCGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	4802	0.13875753349093092	No Hit
CGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	3473	0.10035504244356583	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	3740	62.809994	5
GTCTACG	3790	61.98137	4
TACGGCC	3850	61.192165	7
CTACGGC	3870	60.87152	6
ACGGCCA	4080	57.826412	8
CGGCCAT	4295	54.772507	9
GGGTCTA	3060	54.75431	2
GCCATAC	4305	54.486423	11
CCTGGTT	6480	52.573315	70
CCATACC	4480	52.358047	12
GGCCATA	4535	51.87385	10
CATACCA	4530	51.855625	13
GCGCGGT	6020	51.800713	9
TACCACC	4640	50.32788	15
CGGTCTA	615	49.483288	2
TGGCGCG	6370	48.6826	15
CGCGGTG	6415	48.61111	10
CGGTTCA	875	48.0663	5
CTGAACG	4865	47.77756	22
GCGTCTA	760	47.690945	2