EGAF00005318742 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318742
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3152233
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15770	0.5002802775048671	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9851	0.31250862483832886	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9770	0.30993901783275535	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9159	0.2905559328894787	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7259	0.2302812006599766	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4608	0.14618208742818187	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4055	0.12863896799506888	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4030	0.12784587941310177	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3587	0.11379234974064417	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3393	0.10763798234457922	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	3154	0.10005605550097343	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1310	38.909767	70
CGCGGCA	4695	37.611588	32
GCGGCAC	4770	37.038055	33
CCCGTCG	4740	36.121212	44
TCGCCGG	4730	36.048714	48
CCGTCGC	4760	35.926456	45
CGGCACC	5010	35.426834	34
ACCCGCG	5375	33.029957	25
CCCCCGA	5405	32.86937	19
CACCCCC	5715	31.554937	37
CCCCCGT	5410	31.534794	42
GCACCCC	5790	31.474638	36
CCCCGAC	5640	31.398706	20
ATGGCCG	1330	30.438272	69
GGCACCC	5885	30.2936	35
GCGCGGG	5925	29.754295	62
CCGCGCG	6035	29.624762	27
AGTCCGC	6285	28.613554	7
GATAGGC	3200	28.56807	40
CAGTCCG	6060	28.4889	6