EGAF00005318746 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318746
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3130073
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15619	0.49899794669325603	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10070	0.3217177362956072	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9511	0.30385872789548357	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9151	0.29235739869325733	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7401	0.23644815951576847	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4544	0.14517233304143384	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4176	0.1334154187458248	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4022	0.12849540569820575	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3632	0.11603563239579397	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3600	0.11501329202226274	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3203	0.10232988176314098	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTTATCG	155	37.578457	6
CGCGGCA	4625	36.84624	32
TGGCCGT	1435	35.827885	70
GCGGCAC	4850	35.15904	33
CGGCACC	5015	34.027573	34
CCCGTCG	4840	33.588406	44
TCGCCGG	4835	33.23353	48
CCGTCGC	4875	33.012608	45
ATGGCCG	1250	32.596737	69
ACCCGCG	5400	31.470066	25
CCCCCGA	5435	31.376045	19
CCCCGAC	5580	30.51293	20
GCACCCC	5610	30.46197	36
TTATCGG	180	30.455744	7
CCCCCGT	5425	29.920069	42
GGCACCC	5820	29.340475	35
GTTCCGT	305	29.31321	1
CACCCCC	5820	29.202604	37
CCGCGCG	6060	28.247005	27
AGTCCGC	6220	27.597456	7