EGAF00005318748 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318748
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3120961
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	15549	0.4982119289539344	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9812	0.314390343230819	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	9661	0.3095520898851348	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	9008	0.28862904727101685	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7192	0.23044184147126479	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4578	0.14668558818902255	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3982	0.12758890610936824	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3922	0.12566642133624867	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3645	0.11679094996701336	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3595	0.11518887932274707	No Hit
GGGGCTGGGGGGAGGCCCAAGGGGCAAGAAGCATGGCCACCGAGGCTCCA	3164	0.10137903036917155	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3141	0.10064207787280906	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3121	0.10000124961510252	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	4565	39.078053	32
GCGGCAC	4795	37.074436	33
TCGCCGG	4715	36.73518	48
CCCGTCG	4795	36.061535	44
CCGTCGC	4775	36.023582	45
CGGCACC	4935	35.840916	34
TGGCCGT	1395	34.723022	70
ACCCGCG	5265	33.666725	25
CCCCCGA	5500	32.249813	19
GCACCCC	5560	32.107437	36
CCCCCGT	5415	31.758156	42
CCCCGAC	5675	31.210434	20
CACCCCC	5760	30.895338	37
GGCACCC	5850	30.546736	35
TTATCGG	250	30.152018	7
CGCCCTA	1120	30.15153	61
GTGCCGT	605	29.668083	1
GTTATCG	255	29.560802	6
CCGCGCG	6000	29.524738	27
AGTCCGC	6180	29.162922	7