FastQCFastQC Report
Wed 8 May 2024
EGAF00005318749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3120961
Total Bases232.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT199080.6378804477210706No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG109930.352231251848389No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN95650.3064761142481434No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG89950.2882125089035076No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA44930.14396206809376982No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT43060.13797032388421387No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT37940.12156512048692694No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)