EGAF00005318768 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318768
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4079292
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	29780	0.7300286422251705	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	15704	0.38496876418751097	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	12362	0.30304278291429004	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11526	0.28254903056706904	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8744	0.21435092167954636	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8642	0.21185048778072274	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	8216	0.20140749914445938	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7008	0.17179451728388162	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5668	0.1389456797895321	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5517	0.13524405705695988	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5330	0.13065992824244993	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5021	0.12308508437248425	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4783	0.11725073860856246	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4761	0.11671142933626717	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4756	0.11658885904710917	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4662	0.11428453761093836	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4382	0.10742060141808922	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	8770	37.228302	32
GCGGCAC	8885	36.813713	33
CGGCACC	9070	36.006527	34
CCGTCGC	8700	35.291515	45
CCCGTCG	8780	35.18401	44
TCGCCGG	9130	34.471287	48
GTTATCG	260	34.32738	6
GCACCCC	9650	33.98942	36
CCCCCGA	9835	33.38475	19
CACCCCC	9890	33.25959	37
GGCACCC	9915	33.0629	35
ACCCGCG	9850	33.000366	25
TTATCGG	270	31.784615	7
CCCCGAC	10450	31.232212	20
CGTACGT	155	31.053854	19
CCGCGCG	11105	29.401058	27
GATAGGC	4390	29.255789	40
CCCCCGT	10570	29.117437	42
CCCGCGC	11325	28.929293	26
GTCCGTT	300	28.607206	2