EGAF00005318770 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318770
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4089962
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	30045	0.7346034021831988	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	15956	0.39012587403012544	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	12438	0.3041104049377476	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11538	0.28210531051388743	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	9093	0.22232480399573396	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8720	0.21320491486228965	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	8228	0.20117546324391278	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	7167	0.1752339019286732	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5726	0.14000130074558148	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5642	0.13794749193268788	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5248	0.12831415059602022	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5087	0.12437768370464077	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4901	0.11982996419037634	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4795	0.11723825306934393	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4742	0.11594239750882772	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4609	0.11269053355507949	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4278	0.10459754882808203	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	9015	36.605034	32
GCGGCAC	9275	35.749462	33
CGGCACC	9365	35.42387	34
CCGTCGC	8890	34.1366	45
CCCGTCG	8955	34.069363	44
TCGCCGG	9440	33.264427	48
GCACCCC	10095	33.0397	36
GGCACCC	10265	32.609177	35
CCCCCGA	10320	32.410824	19
ACCCGCG	10275	32.307835	25
TAGTCCG	535	32.08508	6
CACCCCC	10355	32.064384	37
TGGCCGT	1490	30.428816	70
CCCCGAC	10995	30.40175	20
GTCCGTT	400	29.183884	2
TTATCGG	295	29.094097	7
TATCGGA	285	28.910347	8
GTTCCGT	300	28.711973	1
CCGCGCG	11505	28.679012	27
TCAGGAT	2690	28.652859	70