EGAF00005318772 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318772
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	4086457
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	29760	0.7282592230873834	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	16150	0.3952078781203375	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	12425	0.30405311985419153	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	11836	0.2896396560639204	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8947	0.21894271737106252	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8839	0.2162998411582454	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	8344	0.20418665851616694	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	6967	0.17048998680274868	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5817	0.1423482493514553	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	5610	0.1372827366102225	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5252	0.12852209138625464	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5051	0.12360340510128946	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4933	0.1207158181280263	No Hit
GGGGGCAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	4897	0.11983485939042061	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4649	0.11376603253135907	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4645	0.11366814822718066	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	4207	0.10294981691964457	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	9000	36.409454	32
GCGGCAC	9185	35.657825	33
CGGCACC	9345	35.107887	34
CCGTCGC	8855	33.69512	45
CCCGTCG	8920	33.625687	44
GCACCCC	9835	33.44376	36
TCGCCGG	9290	33.35487	48
CCCCCGA	9925	33.046524	19
ACCCGCG	10010	32.720623	25
CACCCCC	10115	32.469467	37
GGCACCC	10165	32.295395	35
TAGTCCG	415	30.604801	6
CCCCGAC	10710	30.574804	20
GATAGGC	4480	29.535286	40
ATAGGCA	4635	28.944834	41
CATTAGC	4610	28.741646	13
CTGATAG	4670	28.521461	38
CCGCGCG	11610	28.390945	27
GCATTAG	4665	28.182728	12
CCCGCGC	11705	28.030117	26