Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005318797 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3287305 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 61 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA | 12528 | 0.3811024532253624 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC | 10737 | 0.326620134122024 | No Hit |
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC | 8610 | 0.2619166764264344 | No Hit |
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG | 8088 | 0.24603740754204434 | No Hit |
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT | 6088 | 0.185197296873883 | No Hit |
GGGGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCTCCCACCCCTCCTCCCCGCGCCCCCGCCCCGGCG | 4790 | 0.1457120650502463 | No Hit |
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC | 4516 | 0.13737696988870823 | No Hit |
GGGGGGAAGGCCCGGCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGT | 3297 | 0.10029492243646393 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCTACGG | 1805 | 0.0 | 59.62012 | 5 |
TACGGCC | 1820 | 0.0 | 59.509 | 7 |
CTACGGC | 1870 | 0.0 | 58.10289 | 6 |
GTCTACG | 1940 | 0.0 | 55.99957 | 4 |
GCGCGGT | 5300 | 0.0 | 53.927944 | 9 |
GCCATAC | 2060 | 0.0 | 51.736042 | 11 |
CGGCCAT | 2105 | 0.0 | 50.958813 | 9 |
ACGGCCA | 2130 | 0.0 | 50.685608 | 8 |
GGGTCTA | 1680 | 0.0 | 50.678238 | 2 |
CGCGGTG | 5655 | 0.0 | 50.664925 | 10 |
CCGAACT | 905 | 0.0 | 50.05443 | 67 |
TGGCGCG | 5690 | 0.0 | 49.6798 | 15 |
CCATACC | 2210 | 0.0 | 48.220142 | 12 |
CGGTTCA | 955 | 0.0 | 47.82778 | 5 |
GGCCATA | 2285 | 0.0 | 47.550285 | 10 |
CGGATAT | 220 | 0.0 | 45.992928 | 1 |
CCGGTTC | 995 | 0.0 | 45.899464 | 4 |
CATACCA | 2315 | 0.0 | 45.883587 | 13 |
GCCGGTT | 1020 | 0.0 | 45.113678 | 3 |
GAACGCG | 2365 | 0.0 | 45.109974 | 24 |