EGAF00005318806 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318806
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3379297
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12626	0.3736280060616158	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9477	0.2804429441981572	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7463	0.22084474966242978	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6455	0.19101606044097338	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	6137	0.18160581919849011	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5739	0.16982822166858963	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	5088	0.1505638598797324	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3802	0.11250860755950129	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3487	0.10318714217779615	No Hit
GCTCAGACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCG	3449	0.102062647941273	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3446	0.10197387208049485	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3426	0.10138203300864056	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2185	0.0	48.047264	70
AGGACCG	810	0.0	40.502804	70
GACGTAT	355	0.0	40.17125	44
CGCGGCA	3895	0.0	35.45166	32
GCGGCAC	4035	0.0	34.233833	33
CGGCACC	4060	0.0	34.11643	34
CGGATAG	450	0.0	33.871765	35
CCGTCGC	3880	0.0	33.460247	45
CCCGTCG	3915	0.0	33.316494	44
TATCGGA	210	0.0	32.826313	8
TCGCCGG	3965	0.0	32.72074	48
GTGCCGT	465	0.0	32.718727	1
ATGGCCG	2565	0.0	32.49382	69
ACGATCG	85	1.2196142E-7	32.44012	6
CGTATCA	445	0.0	32.08798	46
TCGGATA	475	0.0	32.076626	34
ACGTATC	455	0.0	31.363497	45
GCACCCC	4485	0.0	31.362198	36
GGACGTA	475	0.0	30.736605	43
GGCACCC	4745	0.0	29.348606	35