EGAF00005318812 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318812
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3413135
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13315	0.3901105581818475	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	9505	0.27848297825899065	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7589	0.2223469039460789	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	6755	0.1979118903881622	No Hit
CGTTTGAATATTTGCTACTACCACCAAGATCTGCACCTGCGGCGGCTCCACCCGGGCCCGCGCCCTAGGCTTCA	6252	0.1831747059521525	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	6021	0.1764067345710029	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4849	0.14206880184932622	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3978	0.11654974092732927	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3683	0.10790666059209496	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	3523	0.10321888820688313	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3478	0.10190045222354228	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	2110	47.4258	70
TAGTCCG	235	39.64014	6
CGCGGCA	4585	36.69256	32
CGTACGT	170	36.55041	19
AGGACCG	755	35.965897	70
GCGGCAC	4665	35.775448	33
CGGCACC	4855	34.45532	34
ATGGCCG	2310	34.333107	69
GTGCCGT	415	34.143005	1
CCGTCGC	4675	33.79523	45
CCCGTCG	4680	33.665344	44
TCGCCGG	4725	33.42428	48
TATCGGA	145	33.311897	8
GACGTAT	440	31.618265	44
GCACCCC	5450	30.971584	36
CACCCCC	5540	30.544048	37
CCCCCGA	5695	30.125298	19
CGCCCTA	2510	29.9561	61
GGCACCC	5670	29.760658	35
TTATCGG	175	29.572805	7