EGAF00005318816 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318816
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2988934
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	11388	0.38100540192590404	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10300	0.3446044643341071	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7050	0.23587004597625774	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4283	0.14329523502359034	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3901	0.1305147587735293	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3203	0.10716195138467427	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3057	0.10227726674459858	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3023	0.10113973744485492	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTGGA	625	0.0	44.990894	33
TTCGTTG	690	0.0	42.252766	31
TCGTTGG	705	0.0	40.375927	32
GATTTCG	485	0.0	40.054638	28
CCGCGTA	35	0.0013181762	39.609406	2
CGCGGCA	3260	0.0	36.523663	32
AAACGGG	620	0.0	36.434074	39
GCGGCAC	3350	0.0	35.44059	33
AACGGGA	585	0.0	35.053062	40
ATTTCGT	560	0.0	34.694828	29
CGGCACC	3460	0.0	34.319046	34
CCCGTCG	3360	0.0	34.265846	44
GAAACGG	675	0.0	33.97395	38
TCGCCGG	3385	0.0	33.848785	48
CCGTCGC	3385	0.0	33.81749	45
GGAAACG	660	0.0	33.162266	37
CTAGACG	140	0.0	32.552208	64
CGGGAAT	430	0.0	31.534536	42
CGTACGT	55	3.173243E-4	31.505373	19
CCCCCGA	3845	0.0	31.275942	19