EGAF00005318818 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318818
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3085567
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	11447	0.37098530027058235	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	10576	0.3427571010449619	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	7215	0.23383060552566187	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4500	0.14584029450664981	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	3914	0.12684864726645054	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	3316	0.10746809257423352	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3185	0.10322251955637327	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	3132	0.10150484497662828	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	3123	0.10121316438761498	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGGCA	3035	0.0	40.139587	32
GCGGCAC	3155	0.0	38.397232	33
CGGCACC	3275	0.0	37.205914	34
CCCGTCG	3205	0.0	34.954086	44
CCGTCGC	3205	0.0	34.7466	45
TCGCCGG	3220	0.0	34.72167	48
CCCCCGA	3645	0.0	34.22016	19
TTCGTTG	735	0.0	33.995956	31
TCGTTGG	745	0.0	33.542908	32
TGGCCGT	865	0.0	33.321987	70
CGTTGGA	740	0.0	33.304314	33
GCACCCC	3835	0.0	32.238686	36
ACCCGCG	3815	0.0	32.090767	25
TTTCGCG	55	3.0965128E-4	31.637178	45
CCCCGAC	4060	0.0	30.554583	20
CACCCCC	4080	0.0	30.3968	37
TAGTCCG	285	0.0	30.3796	6
GATTTCG	550	0.0	30.284355	28
AAACGGG	720	0.0	29.925507	39
GGCACCC	4115	0.0	29.872854	35