Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00005318854 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 15519093 |
Sequences flagged as poor quality | 0 |
Sequence length | 35-76 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTGGA | 5405 | 0.0 | 37.71751 | 33 |
GATTTCG | 3885 | 0.0 | 37.617386 | 28 |
TCGTTGG | 5445 | 0.0 | 37.373035 | 32 |
TTCGTTG | 5745 | 0.0 | 36.385643 | 31 |
CGGGAAT | 3615 | 0.0 | 34.623318 | 42 |
AAACGGG | 5175 | 0.0 | 34.24822 | 39 |
CGAAACG | 520 | 0.0 | 32.739132 | 37 |
GAAACGG | 5710 | 0.0 | 32.61845 | 38 |
TTACTCG | 1455 | 0.0 | 32.11016 | 57 |
AACGGGA | 4480 | 0.0 | 31.964157 | 40 |
ATTTCGT | 4580 | 0.0 | 31.912052 | 29 |
TCGTTCG | 400 | 0.0 | 30.385517 | 32 |
CGCGGCA | 2510 | 0.0 | 29.468939 | 32 |
ACGGGAA | 3215 | 0.0 | 28.870125 | 41 |
GGAAACG | 5920 | 0.0 | 28.698656 | 37 |
GTGGATA | 9375 | 0.0 | 28.196892 | 5 |
ACCCGCG | 2940 | 0.0 | 26.08864 | 25 |
TTTCGTT | 6460 | 0.0 | 25.905912 | 30 |
TCGCCGG | 2590 | 0.0 | 25.530323 | 48 |
AACGGGT | 1290 | 0.0 | 25.057472 | 40 |