FastQCFastQC Report
Wed 8 May 2024
EGAF00005318885

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005318885
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3271642
Total Bases245.3 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT185030.5655569894261048No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTG130700.3994935876235848No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG95750.2926664959063369No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGA46240.14133575739643883No Hit
CGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT42530.12999588585792698No Hit
GGCGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCT36860.1126651387896353No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN36170.11055610607762097No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC32930.10065282203859714No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)