EGAF00005318908 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318908
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3188987
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	14037	0.44017112644234674	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	12333	0.3867372303493241	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	9962	0.3123876014546312	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8883	0.2785524055130987	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	5853	0.1835379071786746	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	5279	0.16553846095954608	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	4505	0.14126743069194073	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	4278	0.1341491827969195	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4242	0.13302029766819368	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4240	0.13295758182770892	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	3754	0.1177176325899102	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3502	0.10981543668882938	No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCTGCACTGGTGGGGTGAATTCTTTGCC	3434	0.10768309811234728	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	3323	0.10420236896544262	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3256	0.10210138830920289	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1500	37.844284	70
CGCGGCA	3505	36.45983	32
GCGGCAC	3580	35.71124	33
CGGCACC	3700	34.471928	34
CCGTCGC	3585	33.917793	45
TCGCCGG	3660	33.469532	48
CCCGTCG	3685	33.075615	44
CCCCCGT	3850	31.897017	42
ACCCGCG	4125	31.13919	25
CCCCCGA	4185	30.80827	19
GTGCCGT	480	30.190826	1
GCACCCC	4275	29.943886	36
GTTCCGT	315	29.574686	1
GGCACCC	4315	29.494312	35
CCCCGAC	4360	29.34326	20
TCAGGAT	2285	29.13415	70
ATGGCCG	1595	28.764408	69
AGTCCGC	4660	28.015364	7
CACCCCC	4640	27.82281	37
GATAGGC	4185	27.572254	40