EGAF00005318916 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318916
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3681796
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	18305	0.4971758348371284	No Hit
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	11283	0.30645369814079865	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	9290	0.2523225078195533	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	8328	0.22619395534136058	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	5264	0.14297370087859293	No Hit
GCTGCCGGGGGGGCTGTAACACTCGGGGGGGGTTTCGGTCCCGCCGCCGC	4964	0.13482550364007131	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	4653	0.12637853916947053	No Hit
CGCTCCCTCGGCCCCGGGATTCGGCGAGTGCTGCTGCCGGGGGGGCTGTA	4641	0.1260526112799297	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	4515	0.12263036843975061	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	4497	0.1221414766054393	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	3810	0.10348210492922476	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1280	0.0	37.300392	70
CGCGGCA	5825	0.0	37.02755	32
GCGGCAC	6010	0.0	35.835934	33
CGGCACC	6060	0.0	35.66201	34
GCACCCC	6405	0.0	33.8211	36
CCCCCGA	6570	0.0	32.951904	19
GTGCCGT	615	0.0	32.884712	1
TCGCCGG	5735	0.0	32.778255	48
CCCGTCG	5770	0.0	32.338673	44
CCGTCGC	5740	0.0	32.27835	45
GGCACCC	6780	0.0	32.189342	35
CACCCCC	6730	0.0	32.093433	37
ACCCGCG	6890	0.0	30.698208	25
GATAGGC	3405	0.0	30.320126	40
CCCCGAC	7265	0.0	29.708015	20
ACGATCG	70	3.8020757E-5	29.629478	6
ATGGCCG	1305	0.0	29.471474	69
CGCTTCC	845	0.0	28.885672	1
CATTAGC	3645	0.0	28.260363	13
ATAGGCA	3690	0.0	27.983685	41