EGAF00005318920 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318920
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3290250
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TGTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCC	17631	0.5358559379986323	No Hit
GGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCG	13858	0.421183800623053	No Hit
GGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTC	13235	0.40224906921966413	No Hit
GGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGGGCAAGAAG	8626	0.2621685282273383	No Hit
GGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTT	6316	0.19196109718106527	No Hit
GGGGTGGGAGAGCGGTCGCGCCGTGGGAGGGGTGGCCCGGCCCCCCCACG	5396	0.1639996960717271	No Hit
GTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACG	5307	0.16129473444267153	No Hit
TGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACCAGCACGTTGCCCAGGAGCCTGAAGTTCTCAGG	4972	0.15111313729959727	No Hit
GGCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCT	4690	0.1425423600030393	No Hit
GTGCGCGTGCAGGTCGCTCAGGGCGGACAGCGCGTTGGGCATGTCGTCCA	4199	0.12761948180229465	No Hit
GTGGGCCAGGGCATTAGCCACACCAGCCACCACTTTCTGATAGGCAGCCTGCACTGGTGGGGTGAATTCTTTGCC	4086	0.12418509231821291	No Hit
GGGGGTACGGGTGCAGGAAGGGGAGGAGGGGCTGGGGGGAGGCCCAAGGG	4025	0.1223311298533546	No Hit
GTGGCTTAGGAGCTTGAAGTTGACCGGGTCCACCCGAAGCTTGTGCGCGT	3851	0.11704277790441456	No Hit
GACAGGCGTAGCCCCGGGAGGAACCCGGGGCCGCAAGTGCGTTCGAAGTG	3610	0.10971810652685965	No Hit
CTGGGGACAGTCCGCCCCGCCCCCCGACCCGCGCGCGGCACCCCCCCCGTCGCCGGGGCGGGGGCGCGGGGAGG	3607	0.10962692804498138	No Hit
GCACTGGTGGGGTGAATTCTTTGCCAAAGTGATGGGCCAGCACACAGACC	3589	0.10907985715371171	No Hit
GCGGGGAGGTGGGCGGCCAGGGTCACCAGCAGGCAGTGGCTTAGGAGCTT	3303	0.10038750854798267	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGGCCGT	1375	41.624043	70
CGTACTA	125	41.442554	2
CGCGGCA	4295	37.028603	32
GCGGCAC	4445	35.788326	33
CGGCACC	4560	34.971382	34
AGGACCG	810	34.698174	70
TAGTCCG	370	31.734806	6
TCGCCGG	4400	31.51935	48
CCCCCGA	5125	31.281504	19
CCGTCGC	4375	31.260927	45
CCCGTCG	4405	31.19408	44
ACCCGCG	4970	31.174654	25
GCACCCC	5190	31.015743	36
ATGGCCG	1455	30.98264	69
CACCCCC	5290	30.3736	37
TCAGGAT	2560	29.74235	70
CCCCGAC	5430	29.59122	20
GGCACCC	5460	29.341475	35
GATAGGC	5120	29.037764	40
ATAGGCA	5205	28.70143	41