EGAF00005318959 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005318959
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	3308850
Sequences flagged as poor quality	0
Sequence length	35-76
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	14611	0.4415733563020384	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCGCTTGAGCCC	12977	0.39219064025265576	No Hit
GGGGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGATCGCTTGAGTCC	10649	0.3218338697734862	No Hit
GGGGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCG	9977	0.3015246989135198	No Hit
GGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTT	5167	0.1561569729664385	No Hit
GGGGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCCGTCCGTCCGTCCTCC	3580	0.10819468999803557	No Hit
GGGGACTCTTCTGGTCCCCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTCA	3466	0.10474938422714841	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	2245	0.0	59.666397	5
GTCTACG	2275	0.0	58.87959	4
TACGGCC	2320	0.0	56.852924	7
CTACGGC	2385	0.0	55.87742	6
GCGCGGT	6515	0.0	52.029636	9
ACGGCCA	2670	0.0	49.656258	8
GCCATAC	2705	0.0	49.143806	11
GGGTCTA	2015	0.0	48.51282	2
CCGAACT	980	0.0	48.501827	67
CGGCCAT	2755	0.0	48.248245	9
TGGCGCG	7035	0.0	48.13888	15
CGCGGTG	7120	0.0	47.706005	10
GCCGGTT	990	0.0	46.258934	3
GGTCTAC	2370	0.0	46.00111	3
CGCGTAA	30	6.6103024E-4	45.572647	2
CCATACC	2925	0.0	45.330685	12
CATACCA	2965	0.0	44.949657	13
GGCCATA	3010	0.0	44.275635	10
CGTGCCT	7860	0.0	43.331654	20
TGAACGC	3035	0.0	43.20295	23